# Joint Species Distribution Models

## Documentation for package ‘jSDM’ version 0.2.6

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

jSDM-package | joint species distribution models
aravo | Distribution of Alpine plants in Aravo (Valloire, France)
birds | birds dataset
eucalypts | eucalypts dataset
frogs | frogs dataset
fungi | fungi dataset
get_enviro_cor | Extract covariances and correlations due to shared environmental responses
get_residual_cor | Calculate the residual correlation matrix from a latent variable model (LVM)
inv_logit | Generalized inverse logit function
jSDM_binomial_logit | Binomial logistic regression
jSDM_binomial_probit | Binomial probit regression
jSDM_binomial_probit_long_format | Binomial probit regression on long format data
jSDM_binomial_probit_sp_constrained | Binomial probit regression with selected constrained species
jSDM_gaussian | Binomial probit regression
jSDM_poisson_log | Poisson regression with log link function
logit | Generalized logit function
madagascar | Madagascar's forest inventory
mites | mites dataset
mosquitos | mosquitos dataset
plot_associations | plot_associations plot species-species associations
plot_residual_cor | Plot the residual correlation matrix from a latent variable model (LVM).
predict.jSDM | Predict method for models fitted with jSDM