Package: jSDM
Type: Package
Title: Joint Species Distribution Models
Version: 0.2.6
Date: 2023-07-12
Imports: Rcpp (>= 1.0.0), graphics, stats, coda, corrplot, stringi,
        MASS, parallel, doParallel, foreach, methods
LinkingTo: Rcpp, RcppArmadillo, RcppGSL
NeedsCompilation: yes
SystemRequirements: GNU GSL
Suggests: knitr, kableExtra, terra, dplyr, rmarkdown, bookdown,
        testthat (>= 3.0.0), boral, Hmsc, BayesComm, snow, snowfall,
        ggplot2, covr, ape, gstat
Authors@R: c(
    person("Jeanne", "Clément", , "jeanne.clement16@laposte.net", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-5228-5015")),
    person("Ghislain", "Vieilledent", , "ghislain.vieilledent@cirad.fr", role = "aut",
           comment = c(ORCID = "0000-0002-1685-4997")),
    person("Frédéric", "Gosselin", , "frederic.gosselin@inrae.fr", role = "ctb",
           comment = c(ORCID = "0000-0003-3737-106X")),
    person("CIRAD", role = c("cph", "fnd"))
  )
Maintainer: Jeanne Clément <jeanne.clement16@laposte.net>
Description: Fits joint species distribution models ('jSDM')
    in a hierarchical Bayesian framework (Warton and al. 2015
    <doi:10.1016/j.tree.2015.09.007>). The Gibbs sampler is written
    in 'C++'. It uses 'Rcpp', 'Armadillo' and 'GSL' to maximize computation
    efficiency.
Depends: R (>= 3.5.0)
License: GPL-3
URL: https://ecology.ghislainv.fr/jSDM/,
        https://github.com/ghislainv/jSDM
BugReports: https://github.com/ghislainv/jSDM/issues
LazyLoad: yes
Encoding: UTF-8
RoxygenNote: 7.2.3
VignetteBuilder: knitr
Config/testthat/edition: 3
Packaged: 2023-07-17 15:21:44 UTC; clement
Author: Jeanne Clément [aut, cre] (<https://orcid.org/0000-0002-5228-5015>),
  Ghislain Vieilledent [aut] (<https://orcid.org/0000-0002-1685-4997>),
  Frédéric Gosselin [ctb] (<https://orcid.org/0000-0003-3737-106X>),
  CIRAD [cph, fnd]
Repository: CRAN
Date/Publication: 2023-07-22 10:30:09 UTC
Built: R 4.6.0; x86_64-apple-darwin20; 2025-08-18 07:35:24 UTC; unix
Archs: jSDM.so.dSYM
