# Predicting Disease Spread from Flow Data

## Documentation for package ‘epiflows’ version 0.2.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Code demos. Use demo() to run them.
- Package NEWS.

## Help Pages

add_coordinates | Add/Retrieve location coordinates
as.SpatialLinesDataFrame | Convert to SpatialLinesDataFrame class
as.SpatialLinesDataFrame.epiflows | Convert to SpatialLinesDataFrame class
Brazil_epiflows | Yellow Fever Data from Brazil; 2016-12 to 2017-05
epiflows | epiflows
epiflows.vars | Epiflow Global Variables
estimate_risk_spread | Travel-related disease cases spreaded to other locations from an infectious location
estimate_risk_spread.default | Travel-related disease cases spreaded to other locations from an infectious location
estimate_risk_spread.epiflows | Travel-related disease cases spreaded to other locations from an infectious location
get_coordinates | Add/Retrieve location coordinates
get_coordinates.epiflows | Add/Retrieve location coordinates
get_flows | Access flow data
get_flows.epiflows | Access flow data
get_id | Access population identifiers in epiflows objects
get_locations | Access flow data
get_locations.epiflows | Access flow data
get_n | get the number of cases per flow
get_n.epiflows | get the number of cases per flow
get_pop_size | Get population size for each entry in locations
get_pop_size.epiflows | Get population size for each entry in locations
get_vars | Access location metadata
get_vars.epiflows | Access location metadata
global_vars | Epiflow Global Variables
grid_epiflows | Visualise epidemic flows using a grid
make_epiflows | Create an epiflows object
make_epiflows.data.frame | Create an epiflows object
make_epiflows.integer | Create an epiflows object
make_epiflows.numeric | Create an epiflows object
map_epiflows | Map flows of people between locations
plot.epiflows | Various plots for epiflows objects
print.epiflows | Print method from epiflows objects
set_vars | Access location metadata
set_vars.epiflows | Access location metadata
set_vars<- | Access location metadata
set_vars<-.epiflows | Access location metadata
vis_epiflows | Visualise epidemic flows using visNetwork
YF_Brazil | Yellow Fever Data from Brazil; 2016-12 to 2017-05
YF_coordinates | Yellow Fever Data from Brazil; 2016-12 to 2017-05
YF_flows | Yellow Fever Data from Brazil; 2016-12 to 2017-05
YF_locations | Yellow Fever Data from Brazil; 2016-12 to 2017-05
[.epiflows | Subset 'epiflows' objects