build_module1_qc_report	build_module1_qc_report
build_module2_qc_report	build_module2_qc_report
build_module3_qc_report	build_module3_qc_report
check_predicted_links	check_predicted_links
craftgrn_demo_data_info	craftgrn_demo_data_info
download_craftgrn_demo_data	download_craftgrn_demo_data
export_predicted_tfbs_bed	export_predicted_tfbs_bed
export_tf_target_bedpe	export_tf_target_bedpe
load_config	load_config
load_gene_tss	load_gene_tss
load_omics_data	load_omics_data
load_predicted_links	load_predicted_links
load_predicted_tfbs	load_predicted_tfbs
load_prep_multiomic_data	load_prep_multiomic_data
module1_correlate_TF_to_canonical_tfbs	module1_correlate_TF_to_canonical_tfbs
module1_filter_canonical_bound_tfbs	module1_filter_canonical_bound_tfbs
module1_predict_full_tfbs	module1_predict_full_tfbs
module1_prepare_tfbs_inputs	module1_prepare_tfbs_inputs
module2_correlate_fp_targets	module2_correlate_fp_targets
module2_correlate_tf_targets	module2_correlate_tf_targets
module2_identify_candidate_links	module2_identify_candidate_links
module2_link_fp_targets	module2_link_fp_targets
module2_output_predicted_links	module2_output_predicted_links
module3_construct_docs	module3_construct_docs
module3_extract_topics	module3_extract_topics
module3_prepare_differential_links	module3_prepare_differential_links
module3_train_topic_models	module3_train_topic_models
output_predicted_tfbs	output_predicted_tfbs
predict_tfbs	predict_tfbs
predict_tf_targets	predict_tf_targets
query_predicted_links	query_predicted_links
report_direct_tf_tf_regulations	report_direct_tf_tf_regulations
report_tf_tf_coregulations	report_tf_tf_coregulations
report_top_tf_targets	report_top_tf_targets
run_app	run_app
run_topic_modeling	run_topic_modeling
save_omics_data	save_omics_data
validate_config	validate_config
visualize_differential_grns	visualize_differential_grns
visualize_topic_modeling_results	visualize_topic_modeling_results
