# A Collection of Database, Data Structure, Data Conversion, Visualization, Reporting, and General Utility Functions

## Documentation for package ‘caroline’ version 1.1.2

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

addFactLevs | Add new levels to the Factors in a DataFrame
bestBy | Find the "best" record within subgroups of a dataframe.
confound.grid | Plot a grid of x y plots split by a confounder z
dbWriteTable2 | Data Import Wrapper for dbWriteTable.
ellipsis.defaults | Modify defaults of possible optional ellipsis parameter values passed to a function
fit.1ln.rprt | Report a model fit in a single line of text output
geomean | Calculate the Geometric Mean
groupBy | Group a datafame by a factor and perform aggregate functions.
heatmatrix | Simple Heatmap Plot
hyperplot | Annotate Outliers in a Scatterplot via an HTML Image-Map
install.prev.pkg | Install the next oldest package
labsegs | Buffered Segments for Point Labels
legend.position | automatically find an optimal position a plot legend based on point counts in each plot corner
leghead | Generate a Color Coded Legend dataframe via head and sum.
lines.sparge | Visually compare all points from different univariate distributions
m | Regexp Match Operator
makeEllipseCoords | Make Ellipse Coordinates
mvlabs | Move Text Labels Interactively
nerge | Named Merge
nv | Create a named vector from a dataframe, table or vector
nv2df | Create a data frame from a named vector
pad | Pad a vector of numerical string with zeros.
parseArgString | Process Command Line Arguments
pct | Add Percentage Columns to a Dataframe
pies | Pie chart scatterplot
plot.confound.grid | Plot a grid of x y plots split by a confounder z
plot.sparge | Visually compare all points from different univariate distributions
plot.spie | Spie charts
plot.xy.ab.p | An x/y scatterplot with a linear regression line and p-value
plotClock | Plot a simple clock.
raAddArms | Add Arms to a RA plot.
raAddAxLabs | Add axis labels to an RA plot.
raAddSigLines | Add Significance Lines to an RA plot.
raPlot | Generate a Ratio Average [RAy] Plot.
read.tab | Read in a Tab Delimited File.
regroup | Regroup a dataframe.
rerowname | Rename select rows of a dataframe
sparge | Visually compare all points from different univariate distributions
sparge.lines | Visually compare all points from different univariate distributions
sparge.plot | Visually compare all points from different univariate distributions
spie | Spie charts
sstable | Sum Sorted Tabulation
tab2df | Table to Data Frame
textplot | A Text-Only Plot
usr2lims | Grab and adjust the current plot dimensions
vennMatrix | Create a Venn Ready Matrix out of a List of Factors
wjitter | Weighted Jitter
write.delim | Write a (tab) delimited text file.
xy.ab.p | An x/y scatterplot with a linear regression line and p-value