Package: SAMtool
Type: Package
Title: Stock Assessment Methods Toolkit
Version: 1.9.2
Authors@R: c(person("Quang", "Huynh", email = "quang@bluematterscience.com", role = c("aut", "cre")), 
  person("Tom", "Carruthers", email = "tom@bluematterscience.com", role = "aut"),
  person("Adrian", "Hordyk", email = "adrian@bluematterscience.com", role = "aut"))
Date: 2026-06-17
Maintainer: Quang Huynh <quang@bluematterscience.com>
Description: Simulation tools for closed-loop simulation are provided for the 'MSEtool' operating model to inform data-rich fisheries. 
  'SAMtool' provides a conditioning model, assessment models of varying complexity with standardized reporting, 
  model-based management procedures, and diagnostic tools for evaluating assessments inside closed-loop simulation.
License: GPL-3
Depends: R (>= 4.1.0), MSEtool (>= 3.0.0)
Imports: TMB (>= 1.9.0), abind, dplyr, gplots, graphics, methods,
        pbapply, rmarkdown, snowfall, stats, utils, vars
LinkingTo: TMB, RcppEigen
Suggests: caret, corpcor, covr, extraDistr, ggplot2, Gmisc, knitr,
        mvtnorm, numDeriv, reshape2, shiny, testthat, tmbstan, usethis
LazyData: yes
LazyLoad: yes
RoxygenNote: 7.3.3
Encoding: UTF-8
URL: https://openmse.com, https://samtool.openmse.com,
        https://github.com/Blue-Matter/SAMtool
BugReports: https://github.com/Blue-Matter/SAMtool/issues
NeedsCompilation: yes
Packaged: 2026-06-18 07:07:46 UTC; quang
Author: Quang Huynh [aut, cre],
  Tom Carruthers [aut],
  Adrian Hordyk [aut]
Repository: CRAN
Date/Publication: 2026-06-19 05:10:30 UTC
Built: R 4.6.0; x86_64-apple-darwin20; 2026-06-19 08:23:45 UTC; unix
Archs: SAMtool.so.dSYM
