# Drug Response Modeling and Biomarker Discovery

## Documentation for package ‘oncoPredict’ version 1.3.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

calcPhenotype | Generate predicted drug sensitivity scores
completeMatrix | This function performs an iterative matrix completion algorithm to predict drug response for pre-clinical data when there are missing ('NA') values.
doVariableSelection | Remove genes with low variation.
glds | This function determines drug-gene associations for pre-clinical data.
homogenizeData | Homogenizes two expression matrices
idwas | This function will test every drug against CNA amplifications or somatic mutations for your cancer type.
map_cnv | This function maps cnv data to genes.
predictionAccuracybyCV | Calculate Cross-Validation Scores using OncoPredict
summarizeGenesByMean | Average over duplicate gene values