bettongs                Burrowing bettongs: two subspecies mixed in a
                        fenced reserve
build_reference         Simulate a reference set of hybrid histories
carp                    Bighead and silver carp: an invasive hybrid
                        zone
check_markers           Check that markers are diagnostic in the
                        parents that actually bred
chickens                Chickens: an advanced intercross after eight
                        generations
class_settings          Settings for the classes that choose between
                        the two tiers
classification_power    Expected accuracy of individual classification
classify_hybrids        Classify recent hybrids individually
classify_hybrids_microsat
                        Classify recent hybrids from microsatellites
diagnostic_markers      Find diagnostic markers between two reference
                        groups
effective_markers       Effective number of independent markers
estimate_history        Estimate the hybrid history of sampled
                        populations
hybrid_scores           Hybrid index and interspecies heterozygosity
hybrid_scores_microsat
                        Hybrid index and heterozygosity from
                        microsatellites
hybridclock_example     Example data set
marker_information      Information carried by a set of markers
marker_power            Chance that a backcrossed hybrid looks pure
microsat_markers        Microsatellite markers
orient_genotypes        Count species-2 alleles at diagnostic markers
plot_triangle           Plot animals on the hybrid triangle
possums                 Mountain pygmy possums: genetic rescue at 24
                        microsatellites
predict.hybridclock_model
                        Predict histories from sample summaries
random_map              Random marker map
sample_summaries        Summarize a population sample of hybrid scores
shared_loci             Find loci shared by both species
simulate_hybrid_zone    Simulate a hybrid population forward in time
train_clock             Train the hybrid clock on a reference set
wolves                  Mexican wolves: crosses between two captive
                        lineages
