Climate Change Vulnerability Assessment with Constrained Latent Models

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Documentation for package ‘ccva’ version 0.1.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

as_ccva	Build a CCVA dataset
ccva	Run a complete CCVA
ccva_adaptive	Score the exposure, sensitivity and adaptive-capacity components
ccva_adjust_method	Adjust trait measurements for assay methodology
ccva_aggregate	Aggregate species vulnerability to sites or communities
ccva_calibrate	Calibrated risk predictions
ccva_check	Diagnose the indicators before combining them
ccva_classify	Classify vulnerability scores into Low / Moderate / High
ccva_colours	Colours and theme used by ccva plots
ccva_combine	Combine the components into vulnerability
ccva_compare	Compare several CCVA fits
ccva_component	Score the exposure, sensitivity and adaptive-capacity components
ccva_constraints	Constraints on predictors and components
ccva_default_constraints	Constraints on predictors and components
ccva_exposure	Score the exposure, sensitivity and adaptive-capacity components
ccva_methods	List available methods
ccva_plot	Plot any step of a CCVA
ccva_rank	Rank units by vulnerability
ccva_recommend	Match methods to the data available
ccva_register	Register a new component or combination method
ccva_report	Write a reproducible CCVA report
ccva_sdm_exposure	Compute exposure predictors from species distribution model output
ccva_sensitivity	Score the exposure, sensitivity and adaptive-capacity components
ccva_sim	Simulated CCVA dataset
ccva_simulate	Simulate CCVA data with a known latent structure
ccva_sim_data	Specification of the bundled simulated data
ccva_thermal_margin	Compute thermal sensitivity predictors
ccva_uncertainty	Quantify uncertainty in vulnerability scores and rankings
ccva_unconstrained	Constraints on predictors and components
ccva_unregister	Register a new component or combination method
ccva_validate	Validate vulnerability scores against observed outcomes
constrain_bounds	Constraints on predictors and components
constrain_equal	Constraints on predictors and components
constrain_fixed	Constraints on predictors and components
constrain_link	Constraints on predictors and components
constrain_moderator	Constraints on predictors and components
constrain_shape	Constraints on predictors and components
constrain_sign	Constraints on predictors and components
predict.ccva_fit	Predict vulnerability for new units
theme_ccva	Colours and theme used by ccva plots