Package: baytaAAR
Type: Package
Title: Bayesian Transition Analysis with Markov Chain Monte Carlo
Version: 1.0.3
Authors@R: c(person(given = "Nils", family = "Müller-Scheeßel",
                      email = "nils.mueller-scheessel@ufg.uni-kiel.de",
                      role = c("aut", "cre", "cph"),
                      comment = c(ORCID = "0000-0001-7992-8722")),
                      person(given = "Christoph", family = "Rinne", 
                      email = "crinne@ufg.uni-kiel.de", 
                      role = c("aut"),
                      comment = c(ORCID = "0000-0002-9829-6182")))
Maintainer: Nils Müller-Scheeßel <nils.mueller-scheessel@ufg.uni-kiel.de>
Description: Provides Bayesian age estimation for bioarchaeological skeletal 
    data using ordinal probit regression models implemented in 'JAGS' and 'NIMBLE'. 
    The package is designed to handle multiple ordinal traits of adult individuals
    and incorporates a Gompertz prior on age to reflect population-level mortality. 
    It accounts for estimation uncertainties and supports full customization of 
    model parameters and Markov Chain Monte Carlo settings. For more details
    see Müller-Scheeßel et al. (2026) <doi:10.1002/ajpa.70289>.
License: GPL-3
Encoding: UTF-8
LazyData: true
Imports: tidyr, Rdpack, dplyr, scoringRules, ggpubr, flexsurv, coda,
        checkmate, stats
RoxygenNote: 7.3.3
Suggests: testthat (>= 3.0.0), withr, knitr, rmarkdown, ggplot2,
        gridExtra, bayesplot, tidybayes, rjags, runjags, ggridges
Depends: R (>= 4.1.0), nimble
RdMacros: Rdpack
VignetteBuilder: knitr
Config/testthat/edition: 3
URL: https://github.com/ISAAKiel/baytaAAR,
        https://isaakiel.github.io/baytaAAR/
BugReports: https://github.com/ISAAKiel/baytaAAR/issues
Config/Needs/website: rmarkdown
NeedsCompilation: no
Packaged: 2026-06-08 07:40:40 UTC; Nils
Author: Nils Müller-Scheeßel [aut, cre, cph] (ORCID:
    <https://orcid.org/0000-0001-7992-8722>),
  Christoph Rinne [aut] (ORCID: <https://orcid.org/0000-0002-9829-6182>)
Repository: CRAN
Date/Publication: 2026-06-15 13:40:15 UTC
Built: R 4.5.2; ; 2026-06-15 14:59:29 UTC; unix
