Analysis of Qualitative Traits, Segregation and Genetic Linkage


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Documentation for package ‘BKQualit’ version 0.1.1

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BKQualit-package BKQualit: Analysis of Qualitative Traits in Plant Breeding
BKQualit BKQualit: Analysis of Qualitative Traits in Plant Breeding
bq_data Load a bundled example dataset
bq_diversity Diversity of qualitative descriptors
bq_heterogeneity Pooled and heterogeneity chi-square across families
bq_linkage Estimate genetic linkage by maximum likelihood
bq_mca Multiple correspondence analysis and Gower clustering of accessions
bq_palette Colour palettes for qualitative-trait figures
bq_plot Plot a BKQualit result
bq_plot.default Plot a BKQualit result
bq_save Save every figure from a BKQualit result
bq_segregate Test observed segregation against Mendelian ratios
scale_color_bq Discrete colour and fill scales for BKQualit palettes
scale_colour_bq Discrete colour and fill scales for BKQualit palettes
scale_fill_bq Discrete colour and fill scales for BKQualit palettes
theme_bq The BKQualit ggplot2 theme