Computing Graph Structures on WikiPathways

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Documentation for package ‘WayFindR’ version 0.3.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

as.graphNEL	Convert igraph object to Ragraph
collectAnchors	Utility Functions to Parse GPML FIles
collectEdges	Utility Functions to Parse GPML FIles
collectEntries	Utility Functions to Parse KGML FIles
collectGroups	Utility Functions to Parse GPML FIles
collectLabels	Utility Functions to Parse GPML FIles
collectNodes	Utility Functions to Parse GPML FIles
collectReactions	Utility Functions to Parse KGML FIles
collectRelations	Utility Functions to Parse KGML FIles
collectShapes	Utility Functions to Parse GPML FIles
cycleSubgraph	Finding Cycles in Biological Pathways
edgeColors	GPML GraphingR Data
edgeLegend	Converting GPML FIles to Igraph Objects
edgeTypes	GPML GraphingR Data
findCycles	Finding Cycles in Biological Pathways
gpml-cycles	Finding Cycles in Biological Pathways
gpml-data	GPML GraphingR Data
gpml-utility	Utility Functions to Parse GPML FIles
GPMLtoIgraph	Converting GPML FIles to Igraph Objects
interpretCycle	Finding Cycles in Biological Pathways
kgml-utility	Utility Functions to Parse KGML FIles
KGMLtoIgraph	Converting GPML FIles to Igraph Objects
nodeColors	GPML GraphingR Data
nodeLegend	Converting GPML FIles to Igraph Objects
nodeShapes	GPML GraphingR Data