Interoperating with 'NIMBLE' for Generic Analysis of MCMC Samples

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Documentation for package ‘nimbleExtra’ version 0.1.15

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

nimbleExtra-package	nimbleExtra: Interoperating with 'NIMBLE' for Generic Analysis of MCMC Samples
add_predictions	Add predictions to a dataframe of parameters
coda_samples	Extract a list of MCMC chains from NIMBLE output
example_datasets	Sample NIMBLE datasets
MCMC_initial_values	Construct MCMC initial values
MCMC_iterations	Construct the total number of MCMC iterations
mcmc_quantile	Quantile(s) of a quantity across a joint distribution
nimbleExtra	nimbleExtra: Interoperating with 'NIMBLE' for Generic Analysis of MCMC Samples
nimble_data_m0_s0_w0_a0_c1	Sample NIMBLE datasets
nimble_data_m0_s0_w0_a0_c2	Sample NIMBLE datasets
nimble_data_m0_s0_w0_a1_c1	Sample NIMBLE datasets
nimble_data_m0_s0_w0_a1_c2	Sample NIMBLE datasets
nimble_data_m0_s0_w1_a0_c1	Sample NIMBLE datasets
nimble_data_m0_s0_w1_a0_c2	Sample NIMBLE datasets
nimble_data_m0_s0_w1_a1_c1	Sample NIMBLE datasets
nimble_data_m0_s0_w1_a1_c2	Sample NIMBLE datasets
nimble_data_m0_s1_w0_a0_c1	Sample NIMBLE datasets
nimble_data_m0_s1_w0_a0_c2	Sample NIMBLE datasets
nimble_data_m0_s1_w0_a1_c1	Sample NIMBLE datasets
nimble_data_m0_s1_w0_a1_c2	Sample NIMBLE datasets
nimble_data_m0_s1_w1_a0_c1	Sample NIMBLE datasets
nimble_data_m0_s1_w1_a0_c2	Sample NIMBLE datasets
nimble_data_m0_s1_w1_a1_c1	Sample NIMBLE datasets
nimble_data_m0_s1_w1_a1_c2	Sample NIMBLE datasets
nimble_data_m1_s0_w0_a0_c1	Sample NIMBLE datasets
nimble_data_m1_s0_w0_a0_c2	Sample NIMBLE datasets
nimble_data_m1_s0_w0_a1_c1	Sample NIMBLE datasets
nimble_data_m1_s0_w0_a1_c2	Sample NIMBLE datasets
nimble_data_m1_s0_w1_a0_c1	Sample NIMBLE datasets
nimble_data_m1_s0_w1_a0_c2	Sample NIMBLE datasets
nimble_data_m1_s0_w1_a1_c1	Sample NIMBLE datasets
nimble_data_m1_s0_w1_a1_c2	Sample NIMBLE datasets
nimble_data_m1_s1_w0_a0_c1	Sample NIMBLE datasets
nimble_data_m1_s1_w0_a0_c2	Sample NIMBLE datasets
nimble_data_m1_s1_w0_a1_c1	Sample NIMBLE datasets
nimble_data_m1_s1_w0_a1_c2	Sample NIMBLE datasets
nimble_data_m1_s1_w1_a0_c1	Sample NIMBLE datasets
nimble_data_m1_s1_w1_a0_c2	Sample NIMBLE datasets
nimble_data_m1_s1_w1_a1_c1	Sample NIMBLE datasets
nimble_data_m1_s1_w1_a1_c2	Sample NIMBLE datasets
nimble_summary	Extract MCMC summaries from NIMBLE output
nimble_test	Test NIMBLE
nimble_waic	Extract WAIC summaries from NIMBLE output
n_chains	Number of MCMC chains
posterior_key	Construct a primary key for MCMC samples in posterior::draws_df format
posterior_summary_key	Construct a primary key for MCMC samples in posterior::draws_summary format
print_dataframe	Print information about a dataframe
print_figures	Render a list of figures
probability	Probability of satisfying a predicate across a joint distribution
samples	Extract a chain of MCMC samples from NIMBLE output
scaled	Add scale information to a figure
select_samples	Select an evenly arrayed subset of MCMC samples from a dataframe
stats	Extract MCMC summary statistics from MCMC samples
stat_mean_abline	A ggplot2::ggplot2 stat function for the mean linear relation
stat_mean_hline	A ggplot2::ggplot2 stat function for the sample mean
stat_mean_vline	A ggplot2::ggplot2 stat function for the mean vline, i.e., x intercept
stat_quantile_line	A 'ggplot' stat function for a single quantile
stat_quantile_ribbon	A ggplot2::ggplot2 stat function for two quantiles, min and max, defining the bounds of a ribbon
stat_sample_mean	A ggplot2::ggplot2 stat function for the sample mean
stat_sample_quantile	A ggplot2::ggplot2 stat function for a single quantile