nexus-package	nexus-package
%perturbe%	arithmetic
%perturbe%,CompositionMatrix,CompositionMatrix-method	arithmetic
%power%	arithmetic
%power%,CompositionMatrix,numeric-method	arithmetic
%power%,numeric,CompositionMatrix-method	arithmetic
.ALR	LogRatio-class
.CLR	LogRatio-class
.CompositionMatrix	CompositionMatrix-class
.GroupedALR	GroupedLogRatio-class
.GroupedCLR	GroupedLogRatio-class
.GroupedComposition	GroupedComposition-class
.GroupedILR	GroupedLogRatio-class
.GroupedLR	GroupedLogRatio-class
.GroupedPLR	GroupedLogRatio-class
.ILR	LogRatio-class
.LogRatio	LogRatio-class
.LR	LogRatio-class
.NumericMatrix	NumericMatrix-class
.OutlierIndex	OutlierIndex-class
.PLR	LogRatio-class
.ReferenceGroups	ReferenceGroups-class
aggregate	aggregate
aggregate,CompositionMatrix-method	aggregate
aggregate,GroupedComposition-method	aggregate
all_assigned	is_assigned
all_assigned,ReferenceGroups-method	is_assigned
ALR-class	LogRatio-class
any_assigned	is_assigned
any_assigned,ReferenceGroups-method	is_assigned
any_assigned-method	is_assigned
arctic	arctic
arithmetic	arithmetic
as.data.frame	as.data.frame
as.data.frame,CompositionMatrix-method	as.data.frame
as.data.frame,LogRatio-method	as.data.frame
as.data.frame,OutlierIndex-method	as.data.frame
as.matrix	as.matrix
as.matrix,NumericMatrix-method	as.matrix
as_amounts	as_amounts
as_amounts,CompositionMatrix-method	as_amounts
as_amounts-method	as_amounts
as_composition	as_composition
as_composition,data.frame-method	as_composition
as_composition,matrix-method	as_composition
as_composition,numeric-method	as_composition
as_composition-method	as_composition
as_graph	as_graph
as_graph,ALR-method	as_graph
as_graph,ILR-method	as_graph
as_graph,LR-method	as_graph
as_graph-method	as_graph
barplot	barplot
barplot,CompositionMatrix-method	barplot
bind	bind
boxite	boxite
boxplot	boxplot
boxplot,GroupedLogRatio-method	boxplot
boxplot,LogRatio-method	boxplot
chemistry	chemistry
closure	closure
closure,matrix-method	closure
closure,numeric-method	closure
closure-method	closure
CLR-class	LogRatio-class
color	reexports
CompositionMatrix-class	CompositionMatrix-class
condense	condense
condense,CompositionMatrix-method	condense
condense,GroupedComposition-method	condense
condense-method	condense
covariance	covariance
covariance,ALR-method	covariance
covariance,CLR-method	covariance
covariance,CompositionMatrix-method	covariance
covariance-method	covariance
coxite	coxite
describe	describe
describe,CompositionMatrix-method	describe
describe,GroupedComposition-method	describe
detect_outlier	detect_outlier
detect_outlier,CompositionMatrix,CompositionMatrix-method	detect_outlier
detect_outlier,CompositionMatrix,missing-method	detect_outlier
detect_outlier-method	detect_outlier
dist	dist
dist,CompositionMatrix-method	dist
get	weights
gmean	gmean
group	group
group,CompositionMatrix-method	group
group,GroupedComposition-method	group
group-method	group
GroupedALR-class	GroupedLogRatio-class
GroupedCLR-class	GroupedLogRatio-class
GroupedComposition-class	GroupedComposition-class
GroupedILR-class	GroupedLogRatio-class
GroupedLogRatio-class	GroupedLogRatio-class
GroupedLR-class	GroupedLogRatio-class
GroupedPLR-class	GroupedLogRatio-class
group_factor	group_names
group_factor,ReferenceGroups-method	group_names
group_factor-method	group_names
group_indices	group_names
group_indices,ReferenceGroups-method	group_names
group_indices-method	group_names
group_levels	group_names
group_levels,ReferenceGroups-method	group_names
group_levels-method	group_names
group_n	group_names
group_n,ReferenceGroups-method	group_names
group_n-method	group_names
group_names	group_names
group_names,ReferenceGroups-method	group_names
group_names-method	group_names
group_rows	group_names
group_rows,ReferenceGroups-method	group_names
group_rows-method	group_names
group_size	group_names
group_size,ReferenceGroups-method	group_names
group_size-method	group_names
group_split	group_split
group_split,GroupedComposition-method	group_split
group_split,GroupedLogRatio-method	group_split
group_split-method	group_split
group_subset	group_subset
group_subset,GroupedComposition-method	group_subset
group_subset,GroupedLogRatio-method	group_subset
group_subset-method	group_subset
hist	hist
hist,CompositionMatrix-method	hist
hongite	hongite
ILR-class	LogRatio-class
is_assigned	is_assigned
is_assigned,ReferenceGroups-method	is_assigned
is_assigned-method	is_assigned
is_composition	CompositionMatrix-class
is_element_major	chemistry
is_element_major,CompositionMatrix-method	chemistry
is_element_major-method	chemistry
is_element_minor	chemistry
is_element_minor,CompositionMatrix-method	chemistry
is_element_minor-method	chemistry
is_element_trace	chemistry
is_element_trace,CompositionMatrix-method	chemistry
is_element_trace-method	chemistry
is_grouped	ReferenceGroups-class
is_logratio	LogRatio-class
is_outlier	detect_outlier
is_outlier,OutlierIndex-method	detect_outlier
is_outlier-method	detect_outlier
is_oxide	chemistry
is_oxide,character-method	chemistry
is_oxide,CompositionMatrix-method	chemistry
is_oxide-method	chemistry
kongite	kongite
labels	labels
labels,CompositionMatrix-method	labels
labels,LogRatio-method	labels
lava	lava
LogRatio-class	LogRatio-class
LR-class	LogRatio-class
lra	pca
mahalanobis	mahalanobis
mahalanobis,CompositionMatrix-method	mahalanobis
mahalanobis,ILR-method	mahalanobis
margin	margin
margin,CompositionMatrix-method	margin
margin-method	margin
mean	mean
mean,CompositionMatrix-method	mean
missing	missing
mix	mix
mix,dist,dist-method	mix
mix,matrix,matrix-method	mix
mix-method	mix
nexus	nexus-package
NumericMatrix-class	NumericMatrix-class
OutlierIndex-class	OutlierIndex-class
pairs	pairs
pairs,CompositionMatrix-method	pairs
pairs,GroupedComposition-method	pairs
palette_color_continuous	reexports
palette_color_discrete	reexports
palette_color_picker	reexports
palette_line	reexports
palette_shape	reexports
palette_size_diverging	reexports
palette_size_sequential	reexports
pca	pca
pca,CompositionMatrix-method	pca
pca,LogRatio-method	pca
perturbation	perturbation
perturbation,CompositionMatrix,CompositionMatrix-method	perturbation
perturbation,CompositionMatrix,matrix-method	perturbation
perturbation,CompositionMatrix,numeric-method	perturbation
perturbation,numeric,numeric-method	perturbation
perturbation-method	perturbation
pip	pip
pip,CompositionMatrix-method	pip
pip-method	pip
plot	plot
plot,GroupedLogRatio,missing-method	plot
plot,LogRatio,missing-method	plot
plot,OutlierIndex,missing-method	plot_outlier
plot_outlier	plot_outlier
PLR-class	LogRatio-class
powering	powering
powering,CompositionMatrix,numeric-method	powering
powering,numeric,numeric-method	powering
powering-method	powering
predator	predator
quantile	quantile
quantile,CompositionMatrix-method	quantile
rbind2,CompositionMatrix,CompositionMatrix-method	bind
rbind2,GroupedComposition,GroupedComposition-method	bind
reexports	reexports
ReferenceGroups-class	ReferenceGroups-class
remove_NA	reexports
remove_zero	reexports
replace_NA	replace_NA
replace_NA,CompositionMatrix-method	replace_NA
replace_zero	replace_zero
replace_zero,CompositionMatrix-method	replace_zero
scalar	scalar
scalar,CompositionMatrix,CompositionMatrix-method	scalar
scalar,numeric,numeric-method	scalar
scalar-method	scalar
scale	scale
scale,CompositionMatrix-method	scale
set	weights
slides	slides
split,CompositionMatrix-method	group_split
split,LogRatio-method	group_split
subset	subset
t	t
t,NumericMatrix-method	t
totals	totals
totals,CompositionMatrix-method	totals
totals,LogRatio-method	totals
totals-method	totals
totals<-	totals
totals<-,CompositionMatrix-method	totals
transform_alr	transform_alr
transform_alr,CLR-method	transform_alr
transform_alr,CompositionMatrix-method	transform_alr
transform_alr,GroupedCLR-method	transform_alr
transform_alr,GroupedComposition-method	transform_alr
transform_alr-method	transform_alr
transform_clr	transform_clr
transform_clr,ALR-method	transform_clr
transform_clr,CompositionMatrix-method	transform_clr
transform_clr,GroupedALR-method	transform_clr
transform_clr,GroupedComposition-method	transform_clr
transform_clr-method	transform_clr
transform_ilr	transform_ilr
transform_ilr,ALR,missing-method	transform_ilr
transform_ilr,ALR-method	transform_ilr
transform_ilr,CLR,missing-method	transform_ilr
transform_ilr,CLR-method	transform_ilr
transform_ilr,CompositionMatrix,missing-method	transform_ilr
transform_ilr,CompositionMatrix-method	transform_ilr
transform_ilr,GroupedALR,missing-method	transform_ilr
transform_ilr,GroupedALR-method	transform_ilr
transform_ilr,GroupedCLR,missing-method	transform_ilr
transform_ilr,GroupedCLR-method	transform_ilr
transform_ilr,GroupedComposition,missing-method	transform_ilr
transform_ilr,GroupedComposition-method	transform_ilr
transform_ilr-method	transform_ilr
transform_inverse	transform_inverse
transform_inverse,ALR,missing-method	transform_inverse
transform_inverse,CLR,missing-method	transform_inverse
transform_inverse,GroupedALR,missing-method	transform_inverse
transform_inverse,GroupedCLR,missing-method	transform_inverse
transform_inverse,GroupedILR,missing-method	transform_inverse
transform_inverse,ILR,missing-method	transform_inverse
transform_inverse,matrix,ILR-method	transform_inverse
transform_inverse-method	transform_inverse
transform_lr	transform_lr
transform_lr,CompositionMatrix-method	transform_lr
transform_lr,GroupedComposition-method	transform_lr
transform_lr-method	transform_lr
transform_plr	transform_plr
transform_plr,CompositionMatrix-method	transform_plr
transform_plr,GroupedComposition-method	transform_plr
transform_plr-method	transform_plr
ungroup	group
ungroup,GroupedALR-method	group
ungroup,GroupedCLR-method	group
ungroup,GroupedComposition-method	group
ungroup,GroupedILR-method	group
ungroup,GroupedLR-method	group
ungroup,GroupedPLR-method	group
univariate_ilr	univariate_ilr
univariate_ilr,matrix-method	univariate_ilr
univariate_ilr,numeric-method	univariate_ilr
univariate_ilr-method	univariate_ilr
variance	variance
variance,LogRatio-method	variance
variance-method	variance
variance_total	variance_total
variance_total,CompositionMatrix-method	variance_total
variance_total,LogRatio-method	variance_total
variance_total-method	variance_total
variation	variation
variation,CompositionMatrix-method	variation
variation-method	variation
weights	weights
weights,ALR-method	weights
weights,LogRatio-method	weights
weights,LR-method	weights
[,CompositionMatrix,index,index,logical-method	subset
[,CompositionMatrix,index,index,missing-method	subset
[,CompositionMatrix,index,missing,logical-method	subset
[,CompositionMatrix,index,missing,missing-method	subset
[,CompositionMatrix,missing,index,logical-method	subset
[,CompositionMatrix,missing,index,missing-method	subset
[,CompositionMatrix,missing,missing,logical-method	subset
[,CompositionMatrix,missing,missing,missing-method	subset
[<-,CompositionMatrix-method	subset
[[<-,CompositionMatrix-method	subset
`%perturbe%`,CompositionMatrix,CompositionMatrix-method	arithmetic
`%perturbe%`-method	arithmetic
`%power%`,CompositionMatrix,numeric-method	arithmetic
`%power%`,numeric,CompositionMatrix-method	arithmetic
`%power%`-method	arithmetic
