Migration Corridors and Genetic Range Shifts from Landscape Genetic Data

Documentation for package ‘corridoR’ version 0.2.0

accumulated_cost	Accumulated cost surfaces
as_popcounts	Population allele counts
as_popcounts.genind	Population allele counts
as_popcounts.genlight	Population allele counts
as_popcounts.genpop	Population allele counts
as_popcounts.popcounts	Population allele counts
as_popcounts.vcfR	Population allele counts
both_directions	Use each pair in both directions
corridor_example	Simulated example landscape
corridor_extract	Summarize environmental layers within corridors
directional_gst	Directional genetic differentiation and net migration (dM)
fit_connectivity	Fit a Cubist model of connectivity
lcc_weights	Least cost corridor weights for a pair of sites
least_cost_paths	Least cost paths between sites
lineage_cross	Lineage effect for pairs of sites
make_transition	Transition layer from a resistance surface
map_pairwise	Map pairwise values onto the landscape
pairwise_fst	Pairwise FST between populations
pairwise_table	Pairwise genetic table
pair_weights	Case weights for pairwise data
path_buffers	Buffers around least cost paths
plot_shift	Plot a map of projected change
predict.corridor_model	Predict from a connectivity model
rank_resistance	Rank resistance surfaces by how well they explain genetic distance
read_genotypes	Read genotypes from a file
select_bandwidth	Choose a corridor bandwidth for each group of features
shift_arrows	Arrows for a directional map
site_contrast	Environmental contrasts between sites