# Qploidy 1.5.4

* Fix links
* Fix Unicode character
* Add Taniguti to wordlist

# Qploidy 1.5.3

* Remove HMM functions (exclusive to Qploidy2)
* Add migration notice
* Change maintainer email

# Qploidy 1.5.2

* Z-score calculation is now only applied to markers not filtered by genotype probabilities and missing data
* Markers filtered out during standardization are not considered to define the window boundaries for HMM CNV estimation 
* Last window of each chromosome are never smaller than the defined window size
* CN HMM plots follow same scale for easier comparison between metrics by window

# Qploidy 1.5.1

* Fix HMM CNV estimation when some of the windows don't have heterozygous genotypes (use only z-score for them)
* Improve Shiny interface for HMM CNV estimation

# Qploidy 1.5.0

* Add HMM to estimate CN (beta version)
* Shiny interface improvements
* Add CSV or TSV as possible input files

# Qploidy 1.1.0

* Beta version of Qploidy + BIGapp interface
* Fix Bioconductor dependency call
* Fix %>% call

# Qploidy 1.0.0

* First release
* Functions improvements including comprehensive documentation
* Vignette with functional simulated example
* Testthat tests included
* CRAN submission


# Qploidy 0.0.0.9000

* This is a beta version
* Initial addition of functions
* First version of the vignette



